Sanjose Academy is managed by Sanjose Education and Charitable Trust, founded by Archdiocese of Thalassery. The Trust is registered in 2018 (22549/06.08.2018) at the Sub-registry of Thalassery.
Archbishop Mar George Njaralakatt and Bishop Joseph Pamplany are Patrons of the Trust, while a board of Trustees manage the day to day affairs of the Trust.